[INFO] fetching crate librna-sys 0.3.0...
[INFO] checking librna-sys-0.3.0 against try#a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399 for pr-145770
[INFO] extracting crate librna-sys 0.3.0 into /workspace/builds/worker-3-tc2/source
[INFO] started tweaking crates.io crate librna-sys 0.3.0
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate librna-sys 0.3.0
[INFO] tweaked toml for crates.io crate librna-sys 0.3.0 written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate librna-sys 0.3.0 on toolchain a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate librna-sys 0.3.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b831d4b8af74651979e0e8f3a064ff06a42160aa68a3b09f4a2ac5bdcb2f336f
[INFO] running `Command { std: "docker" "start" "-a" "b831d4b8af74651979e0e8f3a064ff06a42160aa68a3b09f4a2ac5bdcb2f336f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b831d4b8af74651979e0e8f3a064ff06a42160aa68a3b09f4a2ac5bdcb2f336f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b831d4b8af74651979e0e8f3a064ff06a42160aa68a3b09f4a2ac5bdcb2f336f", kill_on_drop: false }`
[INFO] [stdout] b831d4b8af74651979e0e8f3a064ff06a42160aa68a3b09f4a2ac5bdcb2f336f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7725a236bf52f6a0a7ffe1b9467f073f57129ea1de04e2682e6cf936cafca047
[INFO] running `Command { std: "docker" "start" "-a" "7725a236bf52f6a0a7ffe1b9467f073f57129ea1de04e2682e6cf936cafca047", kill_on_drop: false }`
[INFO] [stderr]    Compiling target-lexicon v0.12.16
[INFO] [stderr]    Compiling proc-macro2 v1.0.86
[INFO] [stderr]    Compiling once_cell v1.19.0
[INFO] [stderr]    Compiling unicode-ident v1.0.6
[INFO] [stderr]    Compiling libc v0.2.158
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling prettyplease v0.2.22
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling bindgen v0.70.1
[INFO] [stderr]    Compiling bitflags v2.6.0
[INFO] [stderr]    Compiling shlex v1.1.0
[INFO] [stderr]    Compiling libloading v0.7.3
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling pkg-config v0.3.30
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]     Checking unindent v0.2.3
[INFO] [stderr]    Compiling indoc v2.0.5
[INFO] [stderr]    Compiling clang-sys v1.3.1
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]    Compiling nom v7.1.1
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]    Compiling pyo3-build-config v0.22.2
[INFO] [stderr]    Compiling syn v2.0.77
[INFO] [stderr]    Compiling regex v1.5.5
[INFO] [stderr]    Compiling pyo3-ffi v0.22.2
[INFO] [stderr]    Compiling pyo3-macros-backend v0.22.2
[INFO] [stderr]    Compiling pyo3 v0.22.2
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling pyo3-macros v0.22.2
[INFO] [stderr]    Compiling librna-sys v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: librna-sys@0.3.0: pkg_config failed (
[INFO] [stderr] warning: librna-sys@0.3.0: Consider setting LIBRNA_INCLUDE_DIR/LIBRNA_LIB_DIR instead.
[INFO] [stderr] warning: librna-sys@0.3.0: environment variable not found. Using default LIBRNA_INCLUDE_DIR=/usr/include
[INFO] [stderr] warning: librna-sys@0.3.0: environment variable not found. Using default LIBRNA_LIB_DIR=/usr/lib
[INFO] [stderr] warning: librna-sys@0.3.0: libRNA.a not found!
[INFO] [stderr] warning: librna-sys@0.3.0: Fallback mode for locally building libRNA.a is not yet implemented.
[INFO] [stderr] error: failed to run custom build command for `librna-sys v0.3.0 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/librna-sys-2d2b790b0cd703f5/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-changed=src/wrapper.h
[INFO] [stderr]   cargo:rerun-if-env-changed=LIBRNA_LIB_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=LIBRNA_INCLUDE_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=RNALIB2_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:warning=pkg_config failed (
[INFO] [stderr]   pkg-config exited with status code 1
[INFO] [stderr]   > PKG_CONFIG_ALLOW_SYSTEM_LIBS=1 PKG_CONFIG_ALLOW_SYSTEM_CFLAGS=1 pkg-config --static --libs --cflags RNAlib2 RNAlib2 >= 2.5.0
[INFO] [stderr] 
[INFO] [stderr]   The system library `RNAlib2` required by crate `librna-sys` was not found.
[INFO] [stderr]   The file `RNAlib2.pc` needs to be installed and the PKG_CONFIG_PATH environment variable must contain its parent directory.
[INFO] [stderr]   The PKG_CONFIG_PATH environment variable is not set.
[INFO] [stderr] 
[INFO] [stderr]   HINT: if you have installed the library, try setting PKG_CONFIG_PATH to the directory containing `RNAlib2.pc`.
[INFO] [stderr]   ).
[INFO] [stderr]   cargo:warning=Consider setting LIBRNA_INCLUDE_DIR/LIBRNA_LIB_DIR instead.
[INFO] [stderr]   cargo:warning=environment variable not found. Using default LIBRNA_INCLUDE_DIR=/usr/include
[INFO] [stderr]   cargo:warning=environment variable not found. Using default LIBRNA_LIB_DIR=/usr/lib
[INFO] [stderr]   cargo:warning=libRNA.a not found!
[INFO] [stderr]   cargo:warning=Fallback mode for locally building libRNA.a is not yet implemented.
[INFO] [stderr]   cargo:rustc-link-lib=static=RNA
[INFO] [stderr]   cargo:rustc-link-lib=stdc++
[INFO] [stderr]   cargo:rustc-link-lib=gsl
[INFO] [stderr]   cargo:rustc-link-lib=mpfr
[INFO] [stderr]   cargo:rustc-link-lib=gomp
[INFO] [stderr]   cargo:rustc-link-lib=gmp
[INFO] [stderr]   cargo:include=/usr/include
[INFO] [stderr]   cargo:include=/usr/include/ViennaRNA
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   src/wrapper.h:9:10: fatal error: 'ViennaRNA/2Dfold.h' file not found
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' panicked at src/build.rs:95:10:
[INFO] [stderr]   Unable to generate bindings: ClangDiagnostic("src/wrapper.h:9:10: fatal error: 'ViennaRNA/2Dfold.h' file not found\n")
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x61fd950ebfb2 - std::backtrace_rs::backtrace::libunwind::trace::h35697ee4eba130ce
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x61fd950ebfb2 - std::backtrace_rs::backtrace::trace_unsynchronized::h821d82358390ef61
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x61fd950ebfb2 - std::sys::backtrace::_print_fmt::h9158bc717d508a77
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x61fd950ebfb2 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h5ed0d80c0838d532
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x61fd95112913 - core::fmt::rt::Argument::fmt::h1fe7174bba1b124b
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/core/src/fmt/rt.rs:173:76
[INFO] [stderr]      5:     0x61fd95112913 - core::fmt::write::hb2c60dfec63532e6
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/core/src/fmt/mod.rs:1469:25
[INFO] [stderr]      6:     0x61fd950e8d43 - std::io::default_write_fmt::h6bc575c69608f4bf
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/io/mod.rs:639:11
[INFO] [stderr]      7:     0x61fd950e8d43 - std::io::Write::write_fmt::h7d885d72495c944f
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/io/mod.rs:1954:13
[INFO] [stderr]      8:     0x61fd950ebe02 - std::sys::backtrace::BacktraceLock::print::h4bc25f9b1002918e
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      9:     0x61fd950ed3c3 - std::panicking::default_hook::{{closure}}::h692acb67e5838edc
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/panicking.rs:300:27
[INFO] [stderr]     10:     0x61fd950ed1a5 - std::panicking::default_hook::h6d7f5243a6b747a3
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/panicking.rs:327:9
[INFO] [stderr]     11:     0x61fd950eddd5 - std::panicking::rust_panic_with_hook::hb10a8b2fbcdc8429
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/panicking.rs:833:13
[INFO] [stderr]     12:     0x61fd950edb6a - std::panicking::begin_panic_handler::{{closure}}::hba6753e2258c3ca5
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/panicking.rs:706:13
[INFO] [stderr]     13:     0x61fd950ec4a9 - std::sys::backtrace::__rust_end_short_backtrace::h2cb272d2e7861977
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/sys/backtrace.rs:174:18
[INFO] [stderr]     14:     0x61fd950ed7fd - __rustc[eab4d5e6b70a8ffe]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/panicking.rs:697:5
[INFO] [stderr]     15:     0x61fd95110ca0 - core::panicking::panic_fmt::hf5fc61f5edac1f66
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/core/src/panicking.rs:75:14
[INFO] [stderr]     16:     0x61fd95111106 - core::result::unwrap_failed::haa623b4ff31ed2b9
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/core/src/result.rs:1761:5
[INFO] [stderr]     17:     0x61fd94bdc2d4 - core::result::Result<T,E>::expect::h6a485df45cf04ff5
[INFO] [stderr]     18:     0x61fd94bdede5 - build_script_build::main::hf6e17a9887d81b08
[INFO] [stderr]     19:     0x61fd94bdb093 - core::ops::function::FnOnce::call_once::h117b1df59a272464
[INFO] [stderr]     20:     0x61fd94bdacf6 - std::sys::backtrace::__rust_begin_short_backtrace::h2c5c7efb0f0ebe94
[INFO] [stderr]     21:     0x61fd94bdacd9 - std::rt::lang_start::{{closure}}::ha275014c9c0d800e
[INFO] [stderr]     22:     0x61fd950e3c50 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h66ad6720703f8ea1
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/core/src/ops/function.rs:290:21
[INFO] [stderr]     23:     0x61fd950e3c50 - std::panicking::catch_unwind::do_call::he2b21b35195f1300
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/panicking.rs:589:40
[INFO] [stderr]     24:     0x61fd950e3c50 - std::panicking::catch_unwind::hc26ac766233d7e02
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/panicking.rs:552:19
[INFO] [stderr]     25:     0x61fd950e3c50 - std::panic::catch_unwind::h8b08d739cff46c9c
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/panic.rs:359:14
[INFO] [stderr]     26:     0x61fd950e3c50 - std::rt::lang_start_internal::{{closure}}::h45fb10f5cf038da2
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/rt.rs:175:24
[INFO] [stderr]     27:     0x61fd950e3c50 - std::panicking::catch_unwind::do_call::h9dd91bad151f329c
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/panicking.rs:589:40
[INFO] [stderr]     28:     0x61fd950e3c50 - std::panicking::catch_unwind::h4a013f3afc17f233
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/panicking.rs:552:19
[INFO] [stderr]     29:     0x61fd950e3c50 - std::panic::catch_unwind::h402a508eeeb80b75
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/panic.rs:359:14
[INFO] [stderr]     30:     0x61fd950e3c50 - std::rt::lang_start_internal::h310eb6ed8a66b615
[INFO] [stderr]                                  at /rustc/a2a6e871b05c7b8ecc9a3c8a20db1f39e995e399/library/std/src/rt.rs:171:5
[INFO] [stderr]     31:     0x61fd94bdacc1 - std::rt::lang_start::hccae42a97019a46a
[INFO] [stderr]     32:     0x61fd94bdf855 - main
[INFO] [stderr]     33:     0x709d2560f1ca - <unknown>
[INFO] [stderr]     34:     0x709d2560f28b - __libc_start_main
[INFO] [stderr]     35:     0x61fd94bd9d65 - _start
[INFO] [stderr]     36:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "7725a236bf52f6a0a7ffe1b9467f073f57129ea1de04e2682e6cf936cafca047", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7725a236bf52f6a0a7ffe1b9467f073f57129ea1de04e2682e6cf936cafca047", kill_on_drop: false }`
[INFO] [stdout] 7725a236bf52f6a0a7ffe1b9467f073f57129ea1de04e2682e6cf936cafca047
